mcxdump(1)

NAME
mcxdump - dump matrices, optionally map indices to labels

SYNOPSIS
mcxdump -imx <fname> (matrix file) [-dump <fname> (dumpf file ('-' for stdout))] [-tab <fname> (row/column tab (label) file)] [-tabc <fname> (column tab file)] [-tabr <fname> (row tab file)] [--lazy-tab (allow tab/domain mismatch)] [--no-values (omit values)] [--dump-pairs (emit pairs per line)] [--dump-lines (emit rows per line)] [--dump-rlines (omit leading column node)] [-sep-value <str> (node/value separator)] [-sep <str> (field separator)] [-h (list help)] [--apropos (list synopsis of all options)]

DESCRIPTION
mcxdump reads a data file satisfying the mcl input format (refer to mcxio(5)). It outputs a line-based format. The --dump-pairs option yields a single matrix entry per line, identified by the respective column and row identifiers (either index or label) separated by the field separator. The --dump-lines and --dump-rlines result in the joining of all row entries on a single line, separated by the field separator. For both formats, the matrix value corresponding with a particular entry is by default output as well.

OPTIONS
Input matrix.
Output stream.
Substitute column indices and row indices by labels from the tab file. Since the same tab file is used for both, this implies that the matrix domains are identical.
Substitute column indices by labels from the tab file.
Substitute row indices by labels from the tab file.
If used, the tab file domain(s) do not necessarily need to match the corresponding domain in the input matrix. Entries missing in the tab files will be replaced by a question mark.
Do not emit values.
Output a single pair of column-identifier and row-identifier per line, optionally followed by the value of the corresponding matrix entry. All fields are separated by the field separator.
For each matrix column, the corresponding row is output on a single line, with row identifiers separated by the field separator and values attached to the row identifier by the node/value separator. In this format, the column identifier is output as the leading field.
As the option above, except that the column identifier is not output.
Set the node/value separator for line based row ensemble output.
Set the field separator.
Print help, this could possibly be the same output as supplied with --apropos.
List a one-line synopsis for all options.

AUTHOR
Stijn van Dongen.

SEE ALSO
mcl, mclfaq, and mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.