S4groupGeneric            package:methods            R Documentation

_S_4 _G_r_o_u_p _G_e_n_e_r_i_c _F_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Methods can be defined for groups of functions known as _group
     generic functions_.  These exist in both S3 (see S3groupGeneric)
     and S4 flavours, with different groups.

     Methods are defined for the group of functions as a whole.  A
     method defined for an individual member of the group takes
     precedence over a method defined for the group as a whole.

     When package 'methods' is attached there are objects visible with
     the names of the group generics: these functions should never be
     called directly (a suitable error message will result if they
     are).

_U_s_a_g_e:

     ## S4 group generics:
     Arith(e1, e2)
     Compare(e1, e2)
     Ops(e1, e2)
     Logic(e1, e2)
     Math(x)
     Math2(x, digits)
     Summary(x, ..., na.rm = FALSE)
     Complex(z)

_A_r_g_u_m_e_n_t_s:

x, z, e1, e2: objects.

  digits: number of digits to be used in 'round' or 'signif'.

     ...: further arguments passed to or from methods.

   na.rm: logical: should missing values be removed?

_D_e_t_a_i_l_s:

     When package 'methods' is attached (which it is by default),
     formal (S4) methods can be defined for the group generic functions
     (which are R objects which should never be called directly - a
     suitable error message will result if they are).  There are also
     S3 groups 'Math', 'Ops', 'Summary' and 'Complex', see
     '?S3groupGeneric', with no corresponding R objects.

     The functions belonging to the various groups are as follows:

     '_A_r_i_t_h' '"+"', '"-"', '"*"', '"^"', '"%%"', '"%/%"', '"/"'

     '_C_o_m_p_a_r_e' '"=="', '">"', '"<"', '"!="', '"<="', '">="'

     '_L_o_g_i_c' '"&"', '"|"', but *not* '"!"' since that has only one
          argument.  Note that this is contrary to Chambers(1998), on
          purpose.

     '_O_p_s' '"Arith"', '"Compare"', '"Logic"'

     '_M_a_t_h' '"log"', '"sqrt"', '"log10"', '"cumprod"', '"abs"',
          '"acos"', '"acosh"', '"asin"', '"asinh"', '"atan"',
          '"atanh"', '"ceiling"', '"cos"', '"cosh"', '"cumsum"',
          '"exp"', '"floor"', '"gamma"', '"lgamma"', '"sin"', '"sinh"',
          '"tan"', '"tanh"', '"trunc"'

     '_M_a_t_h_2' '"round"', '"signif"'

     '_S_u_m_m_a_r_y' '"max"', '"min"', '"range"', '"prod"', '"sum"', '"any"',
          '"all"'

     '_C_o_m_p_l_e_x' '"Arg"', '"Conj"', '"Im"', '"Mod"', '"Re"'

     Note that '"Ops"' merely consists of three sub groups. Functions
     with the group names exist in the 'methods' package but should not
     be called directly.

     All the functions in these groups (other than the group generics
     themselves) are basic functions in R.  They are not by default S4
     generic functions, and many of them are defined as primitives,
     meaning that they do not have formal arguments.  However, you can
     still define formal methods for them.  The effect of doing so is
     to create an S4 generic function with the appropriate arguments,
     in the environment where the method definition is to be stored. 
     It all works more or less as you might expect, admittedly via a
     bit of trickery in the background.

     Note: currently those members which are not primitive functions
     must have been converted to S4 generic functions (preferably
     _before_ setting an S4 group generic method) as it only sets
     methods for known S4 generics.  This can be done by a call to
     'setGeneric', for example 'setGeneric("round", group="Math2")'.

_R_e_f_e_r_e_n_c_e_s:

     Appendix A, _Classes and Methods_ of
      Chambers, J. M.  and Hastie, T. J. eds (1992) _Statistical Models
     in S._ Wadsworth & Brooks/Cole.

     Chambers, J. M. (1998) _Programming with Data._ Springer, pp.
     352-4.

_S_e_e _A_l_s_o:

     S3groupGeneric for S3 group generics.

_E_x_a_m_p_l_e_s:

     setClass("testComplex", representation(zz = "complex"))
     ## method for whole group "Complex"
     setMethod("Complex", "testComplex",
               function(z) c("groupMethod", callGeneric(z@zz)))
     ## exception for Arg() :
     setMethod("Arg", "testComplex",
               function(z) c("ArgMethod", Arg(z@zz)))
     z1 <- 1+2i
     z2 <- new("testComplex", zz = z1)
     stopifnot(identical(Mod(z2), c("groupMethod", Mod(z1))))
     stopifnot(identical(Arg(z2), c("ArgMethod", Arg(z1))))

