pdDiag                 package:nlme                 R Documentation

_D_i_a_g_o_n_a_l _P_o_s_i_t_i_v_e-_D_e_f_i_n_i_t_e _M_a_t_r_i_x

_D_e_s_c_r_i_p_t_i_o_n:

     This function is a constructor for the 'pdDiag' class,
     representing a diagonal positive-definite matrix. If the matrix
     associated with 'object' is of dimension n, it is represented by n
     unrestricted parameters, given by the logarithm of the square-root
     of the diagonal values. When 'value' is 'numeric(0)', an
     uninitialized 'pdMat' object, a one-sided formula, or a vector of
     character strings, 'object' is returned as an uninitialized
     'pdDiag' object (with just some of its attributes and its class
     defined) and needs to have its coefficients assigned later,
     generally using the 'coef' or 'matrix' replacement functions. If
     'value' is an initialized 'pdMat' object, 'object' will be
     constructed from 'as.matrix(value)'. Finally, if 'value' is a
     numeric vector, it is assumed to represent the unrestricted
     coefficients of the underlying positive-definite matrix.

_U_s_a_g_e:

     pdDiag(value, form, nam, data)

_A_r_g_u_m_e_n_t_s:

   value: an optional initialization value, which can be any of the
          following: a 'pdMat' object, a positive-definite matrix, a
          one-sided linear formula (with variables separated by '+'), a
          vector of character strings, or a numeric vector of length
          equal to the dimension of the underlying positive-definite
          matrix. Defaults to 'numeric(0)', corresponding to an
          uninitialized object.

    form: an optional one-sided linear formula specifying the
          row/column names for the matrix represented by 'object'.
          Because factors may be present in 'form', the formula needs
          to be evaluated on a data.frame to resolve the names it
          defines. This argument is ignored when 'value' is a one-sided
          formula. Defaults to 'NULL'.

     nam: an optional vector of character strings specifying the
          row/column names for the matrix represented by object. It
          must have  length equal to the dimension of the underlying
          positive-definite matrix and unreplicated elements. This
          argument is ignored when 'value' is a vector of character
          strings. Defaults to 'NULL'.

    data: an optional data frame in which to evaluate the variables
          named in 'value' and 'form'. It is used to obtain the levels
          for 'factors', which affect the dimensions and the row/column
          names of the underlying matrix. If 'NULL', no attempt is made
          to obtain information on  'factors' appearing in the
          formulas. Defaults to the parent frame from which the
          function was called.

_V_a_l_u_e:

     a 'pdDiag' object representing a diagonal positive-definite
     matrix, also inheriting from class 'pdMat'.

_A_u_t_h_o_r(_s):

     Jose Pinheiro Jose.Pinheiro@pharma.novartis.com and Douglas Bates
     bates@stat.wisc.edu

_R_e_f_e_r_e_n_c_e_s:

     Pinheiro, J.C., and Bates, D.M. (2000) "Mixed-Effects Models in S
     and S-PLUS", Springer.

_S_e_e _A_l_s_o:

     'as.matrix.pdMat', 'coef.pdMat', 'pdClasses', 'matrix<-.pdMat'

_E_x_a_m_p_l_e_s:

     pd1 <- pdDiag(diag(1:3), nam = c("A","B","C"))
     pd1

