Package bref
package bref
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ClassDescriptionClass
AsIsBref3Writer
writes VCF data with phased, non-missing genotypes to a binary reference format v3 (bref) file.ClassBref3
converts files in VCF format into bref version 3 format.ClassBref3It
represents an iterator whosenext()
which returns records from a bref version 3 file.ClassBref3Reader
contains methods for reading a bref 3 (binary reference format) file.ClassBrefBlock
represents starting chromosome coordinates and file offset for the start of a binary reference format (bref) data block.InterfaceBrefWrites
writes phased, non-missing genotypes to a binary reference format (bref) file.ClassCompressBref3Writer
writes phased, non-missing genotypes to a binary reference format v3 (bref) file.ClassSeqCoder3
compresses a sequence of allele-codedRefGTRec
objects.ClassUnBref3
converts files in bref version 3 format into VCF format.